BioMart datasets:

  • Mouse: mmusculus_gene_ensembl

  • Human: hsapiens_gene_ensembl

  • Rat: rnorvegicus_gene_ensembl

1 Mouse dataset

# Connect to Ensembl
library(biomaRt)
ensembl <- useMart(biomart = "ENSEMBL_MART_ENSEMBL", dataset = "mmusculus_gene_ensembl")

Table 1. List of filters for the mmusculus_gene_ensembl dataset

Table 2. List of attributes for the mmusculus_gene_ensembl dataset


2 Human dataset

# Connect to Ensembl
ensembl <- useMart(biomart = "ENSEMBL_MART_ENSEMBL", dataset = "hsapiens_gene_ensembl")

Table 3. List of filters for the hsapiens_gene_ensembl dataset

Table 4. List of attributes for the hsapiens_gene_ensembl dataset


3 Rat dataset

# Connect to Ensembl
ensembl <- useMart(biomart = "ENSEMBL_MART_ENSEMBL", dataset = "rnorvegicus_gene_ensembl")

Table 5. List of filters for the rnorvegicus_gene_ensembl dataset

Table 6. List of attributes for the rnorvegicus_gene_ensembl dataset